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Metabolome and Microbiome Signatures in the Roots of Citrus Affected by Huanglongbing.

Identifieur interne : 000068 ( Main/Exploration ); précédent : 000067; suivant : 000069

Metabolome and Microbiome Signatures in the Roots of Citrus Affected by Huanglongbing.

Auteurs : Emily M T. Padhi [États-Unis] ; Nilesh Maharaj [États-Unis] ; Shin-Yi Lin [États-Unis] ; Darya O. Mishchuk [États-Unis] ; Elizabeth Chin [États-Unis] ; Kris Godfrey [États-Unis] ; Elizabeth Foster [États-Unis] ; Marylou Polek [États-Unis] ; Johan H J. Leveau [États-Unis] ; Carolyn M. Slupsky [États-Unis]

Source :

RBID : pubmed:31433274

Descripteurs français

English descriptors

Abstract

Huanglongbing (HLB) is a severe, incurable citrus disease caused by the bacterium 'Candidatus Liberibacter asiaticus' (CLas). Although citrus leaves serve as the site of initial infection, CLas is known to migrate to and colonize the root system; however, little is known about the impact of CLas infection on root metabolism and resident microbial communities. Scions of 'Lisbon' lemon and 'Washington Navel' orange grafted onto 'Carrizo' rootstock were grafted with either CLas-infected citrus budwood or uninfected budwood. Roots were obtained from trees 46 weeks after grafting and analyzed via 1H nuclear magnetic resonance spectroscopy to identify water-soluble root metabolites and high-throughput sequencing of 16S rRNA and ITS gene amplicons to determine the relative abundance of bacterial and fungal taxa in the root rhizosphere and endosphere. In both citrus varieties, 27 metabolites were identified, of which several were significantly different between CLas(+) and control plants. CLas infection also appeared to alter the microbial community structure near and inside the roots of citrus plants. Nonmetric multidimensional scaling (NMDS) and a principal coordinate analysis (PCoA) revealed distinct metabolite and microbial profiles, demonstrating that CLas impacts the root metabolome and microbiome in a manner that is variety-specific.

DOI: 10.1094/PHYTO-03-19-0103-R
PubMed: 31433274


Affiliations:


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Le document en format XML

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<term>Biodiversity (MeSH)</term>
<term>Citrus (microbiology)</term>
<term>DNA, Ribosomal Spacer (genetics)</term>
<term>Metabolome (MeSH)</term>
<term>Microbial Interactions (MeSH)</term>
<term>Microbiota (genetics)</term>
<term>Plant Diseases (microbiology)</term>
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<term>Espaceur de l'ADN ribosomique (génétique)</term>
<term>Interactions microbiennes (MeSH)</term>
<term>Maladies des plantes (microbiologie)</term>
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<term>Métabolome (MeSH)</term>
<term>Racines de plante (microbiologie)</term>
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<div type="abstract" xml:lang="en">Huanglongbing (HLB) is a severe, incurable citrus disease caused by the bacterium '
<i>Candidatus</i>
Liberibacter asiaticus' (CLas). Although citrus leaves serve as the site of initial infection, CLas is known to migrate to and colonize the root system; however, little is known about the impact of CLas infection on root metabolism and resident microbial communities. Scions of 'Lisbon' lemon and 'Washington Navel' orange grafted onto 'Carrizo' rootstock were grafted with either CLas-infected citrus budwood or uninfected budwood. Roots were obtained from trees 46 weeks after grafting and analyzed via
<sup>1</sup>
H nuclear magnetic resonance spectroscopy to identify water-soluble root metabolites and high-throughput sequencing of 16S rRNA and ITS gene amplicons to determine the relative abundance of bacterial and fungal taxa in the root rhizosphere and endosphere. In both citrus varieties, 27 metabolites were identified, of which several were significantly different between CLas(+) and control plants. CLas infection also appeared to alter the microbial community structure near and inside the roots of citrus plants. Nonmetric multidimensional scaling (NMDS) and a principal coordinate analysis (PCoA) revealed distinct metabolite and microbial profiles, demonstrating that CLas impacts the root metabolome and microbiome in a manner that is variety-specific.</div>
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<AbstractText>Huanglongbing (HLB) is a severe, incurable citrus disease caused by the bacterium '
<i>Candidatus</i>
Liberibacter asiaticus' (CLas). Although citrus leaves serve as the site of initial infection, CLas is known to migrate to and colonize the root system; however, little is known about the impact of CLas infection on root metabolism and resident microbial communities. Scions of 'Lisbon' lemon and 'Washington Navel' orange grafted onto 'Carrizo' rootstock were grafted with either CLas-infected citrus budwood or uninfected budwood. Roots were obtained from trees 46 weeks after grafting and analyzed via
<sup>1</sup>
H nuclear magnetic resonance spectroscopy to identify water-soluble root metabolites and high-throughput sequencing of 16S rRNA and ITS gene amplicons to determine the relative abundance of bacterial and fungal taxa in the root rhizosphere and endosphere. In both citrus varieties, 27 metabolites were identified, of which several were significantly different between CLas(+) and control plants. CLas infection also appeared to alter the microbial community structure near and inside the roots of citrus plants. Nonmetric multidimensional scaling (NMDS) and a principal coordinate analysis (PCoA) revealed distinct metabolite and microbial profiles, demonstrating that CLas impacts the root metabolome and microbiome in a manner that is variety-specific.</AbstractText>
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<Language>eng</Language>
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</PublicationTypeList>
<ArticleDate DateType="Electronic">
<Year>2019</Year>
<Month>11</Month>
<Day>08</Day>
</ArticleDate>
</Article>
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<Country>United States</Country>
<MedlineTA>Phytopathology</MedlineTA>
<NlmUniqueID>9427222</NlmUniqueID>
<ISSNLinking>0031-949X</ISSNLinking>
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<DescriptorName UI="D044822" MajorTopicYN="N">Biodiversity</DescriptorName>
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<DescriptorName UI="D002957" MajorTopicYN="Y">Citrus</DescriptorName>
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</MeshHeading>
<MeshHeading>
<DescriptorName UI="D018517" MajorTopicYN="N">Plant Roots</DescriptorName>
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</MeshHeading>
<MeshHeading>
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<Keyword MajorTopicYN="N">bioinformatics</Keyword>
<Keyword MajorTopicYN="N">citrus limon</Keyword>
<Keyword MajorTopicYN="N">citrus sinensis</Keyword>
<Keyword MajorTopicYN="N">huanglongbing</Keyword>
<Keyword MajorTopicYN="N">metabolomics</Keyword>
<Keyword MajorTopicYN="N">microbiome</Keyword>
<Keyword MajorTopicYN="N">plant pathogen interactions</Keyword>
<Keyword MajorTopicYN="N">plant–microbe interactions</Keyword>
<Keyword MajorTopicYN="N">roots</Keyword>
<Keyword MajorTopicYN="N">‘Candidatus Liberibacter asiaticus’</Keyword>
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<PubMedPubDate PubStatus="medline">
<Year>2019</Year>
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<ArticleId IdType="pubmed">31433274</ArticleId>
<ArticleId IdType="doi">10.1094/PHYTO-03-19-0103-R</ArticleId>
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<affiliations>
<list>
<country>
<li>États-Unis</li>
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<li>Californie</li>
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<country name="États-Unis">
<region name="Californie">
<name sortKey="Padhi, Emily M T" sort="Padhi, Emily M T" uniqKey="Padhi E" first="Emily M T" last="Padhi">Emily M T. Padhi</name>
</region>
<name sortKey="Chin, Elizabeth" sort="Chin, Elizabeth" uniqKey="Chin E" first="Elizabeth" last="Chin">Elizabeth Chin</name>
<name sortKey="Foster, Elizabeth" sort="Foster, Elizabeth" uniqKey="Foster E" first="Elizabeth" last="Foster">Elizabeth Foster</name>
<name sortKey="Godfrey, Kris" sort="Godfrey, Kris" uniqKey="Godfrey K" first="Kris" last="Godfrey">Kris Godfrey</name>
<name sortKey="Leveau, Johan H J" sort="Leveau, Johan H J" uniqKey="Leveau J" first="Johan H J" last="Leveau">Johan H J. Leveau</name>
<name sortKey="Lin, Shin Yi" sort="Lin, Shin Yi" uniqKey="Lin S" first="Shin-Yi" last="Lin">Shin-Yi Lin</name>
<name sortKey="Maharaj, Nilesh" sort="Maharaj, Nilesh" uniqKey="Maharaj N" first="Nilesh" last="Maharaj">Nilesh Maharaj</name>
<name sortKey="Mishchuk, Darya O" sort="Mishchuk, Darya O" uniqKey="Mishchuk D" first="Darya O" last="Mishchuk">Darya O. Mishchuk</name>
<name sortKey="Polek, Marylou" sort="Polek, Marylou" uniqKey="Polek M" first="Marylou" last="Polek">Marylou Polek</name>
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<name sortKey="Slupsky, Carolyn M" sort="Slupsky, Carolyn M" uniqKey="Slupsky C" first="Carolyn M" last="Slupsky">Carolyn M. Slupsky</name>
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